назад
TBLASTN 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= GLMU ECOLI
(456 letters)
Database: vc
344 sequences; 4,053,984 total letters
Searching.done
Score E
Sequences producing significant alignments: (bits) Value
embl|AE004342|AE004342 Vibrio cholerae O1 biovar eltor str. N169... 633 0.0
embl|AE004297|AE004297 Vibrio cholerae O1 biovar eltor str. N169... 58 2e-09
embl|AE004175|AE004175 Vibrio cholerae O1 biovar eltor str. N169... 50 6e-07
embl|AE004379|AE004379 Vibrio cholerae O1 biovar eltor str. N169... 37 0.003
embl|AE004365|AE004365 Vibrio cholerae O1 biovar eltor str. N169... 34 0.034
embl|AE004250|AE004250 Vibrio cholerae O1 biovar eltor str. N169... 33 0.058
embl|AE004411|AE004411 Vibrio cholerae O1 biovar eltor str. N169... 32 0.099
embl|AE004231|AE004231 Vibrio cholerae O1 biovar eltor str. N169... 28 1.4
embl|AE004432|AE004432 Vibrio cholerae O1 biovar eltor str. N169... 28 2.4
embl|AE004317|AE004317 Vibrio cholerae O1 biovar eltor str. N169... 27 4.2
embl|AE004399|AE004399 Vibrio cholerae O1 biovar eltor str. N169... 26 9.3
>embl|AE004342|AE004342 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 250 of 251 of the complete
chromosome.
Length = 12928
Score = 633 bits (1632), Expect = 0.0
Identities = 306/450 (68%), Positives = 368/450 (81%)
Frame = -1
Query: 7 SVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQAL 66
S VILAAGKGTRM+S++PKVLHTLAGK MV+HVID N LGA ++HLVYGHGGD ++QAL
Sbjct: 7243 STVILAAGKGTRMHSNMPKVLHTLAGKPMVKHVIDTCNNLGAQNIHLVYGHGGDQMQQAL 7064
Query: 67 KDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGI 126
++N+NWVLQA+QLGTGHA+ QA+P F DDE IL+LYGDVPLIS +T++ L +A+P GI
Sbjct: 7063 ANENVNWVLQAQQLGTGHAVDQASPHFQDDEKILVLYGDVPLISEDTIESLLEAQPTDGI 6884
Query: 127 GLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAK 186
LLTV L+DPTGYGRI R+ G V IVE KDA++EQ+ I+E+NTG+L+A G D+KRWLA
Sbjct: 6883 ALLTVVLEDPTGYGRIVRKRGPVVAIVEQKDASEEQKLIKEVNTGVLVATGRDLKRWLAG 6704
Query: 187 LTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQAEK 246
L NNNAQGEYY+TD+IA A+ EGR + AVHP EVEGVN+R+QL+RLER +Q+ QA+K
Sbjct: 6703 LNNNNAQGEYYLTDVIAAAHDEGRAVEAVHPSHSIEVEGVNDRIQLARLERAFQARQAKK 6524
Query: 247 LLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD 306
LL GVMLRDPARFDLRGTL G DVEID NVIIEGNV++G+ V IG G ++K+ I D+
Sbjct: 6523 LLEQGVMLRDPARFDLRGTLQCGSDVEIDVNVIIEGNVSIGNNVVIGAGSILKDCEIDDN 6344
Query: 307 CEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTY 366
I PY+V+E A + CT+GPF RLRPGAEL + AHVGNFVEMK ARLG+GSKA HLTY
Sbjct: 6343 TVIRPYSVIEGATVGENCTVGPFTRLRPGAELRDDAHVGNFVEMKNARLGEGSKANHLTY 6164
Query: 367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTT 426
LGDAEIG VN+GAG ITCNYDGANK KT+IGDDVFVGSD QLVAPVT+G GATI AGTT
Sbjct: 6163 LGDAEIGKGVNVGAGVITCNYDGANKHKTVIGDDVFVGSDCQLVAPVTIGNGATIGAGTT 5984
Query: 427 VTRNVGENALAISRVPQTQKEGWRRPVKKK 456
+T+NV E L I+R P+ + GW+RP KKK
Sbjct: 5983 LTKNVAEGELVITRAPERKIAGWQRPAKKK 5894
>embl|AE004297|AE004297 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 205 of 251 of the complete
chromosome.
Length = 10901
Score = 57.8 bits (138), Expect = 2e-09
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 5/164 (3%)
Frame = -1
Query: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVI-KNSVIGDDCEI-SPYTVVEDANLAAACTI 326
G +V I N +IE V LG V IG GC I K + +GD+ ++ + T+ + + C I
Sbjct: 788 GHNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNTKLWANVTIYHKVEIGSDCLI 609
Query: 327 GPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGH---LTYLGDAEIGDNVNIGAGTI 383
G +G G ++ G + LG IGD V IGA T
Sbjct: 608 Q------------SGTVIG------ADGFGYANERGEWIKIPQLGSVRIGDRVEIGACT- 486
Query: 384 TCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV 427
D T+I D+V + + Q+ V +G G+ +A GT +
Sbjct: 485 --TIDRGALDDTVIEDNVIIDNQLQIAHNVHIGYGSALAGGTVI 360
>embl|AE004175|AE004175 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 83 of 251 of the complete
chromosome.
Length = 21409
Score = 49.7 bits (117), Expect = 6e-07
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Frame = +2
Query: 351 KKARLGKGSKAGHLTYL---GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDT 407
K+ ++G G GH T + A+IG N N+ T+ + G +GD V++G
Sbjct: 12404 KETQVGPGLYLGHATGVIVNSTAKIGANCNLSPFTVIGSNQGQ---AATVGDCVYIGPHV 12574
Query: 408 QLVAPVTVGKGATIAAGTTVTRNVGENALAI 438
+V +T+G G+ I AG+ V R+V N++ +
Sbjct: 12575 SIVEDITIGDGSIIGAGSVVIRDVPPNSVVV 12667
>embl|AE004379|AE004379 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 36 of 93 of the complete
chromosome.
Length = 10020
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/40 (37%), Positives = 30/40 (75%)
Frame = +2
Query: 392 KFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNV 431
K T+IG+DV++G ++ ++ +T+G GA +A+ + VT++V
Sbjct: 5960 KGDTVIGNDVWLGYESTIMPGITIGDGAIVASKSVVTQDV 6079
>embl|AE004365|AE004365 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 22 of 93 of the complete
chromosome.
Length = 11288
Score = 33.9 bits (76), Expect = 0.034
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 392 KFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQK 446
K T IGD ++G ++ V +G+GA +AA + VT++V ++ Q K
Sbjct: 5068 KGNTEIGDGAWLGMRAMIMPGVKIGEGAIVAANSVVTKDVAPYSIVAGSPAQLVK 5232
>embl|AE004250|AE004250 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 158 of 251 of the complete
chromosome.
Length = 10146
Score = 33.1 bits (74), Expect = 0.058
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3
Query: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV 315
I +V LG VKIG GC IK ++I D EI+ T++
Sbjct: 9028 ISESVILGD-VKIGAGCTIKRAIIDKDVEIAAGTII 8924
>embl|AE004411|AE004411 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 68 of 93 of the complete
chromosome.
Length = 10574
Score = 32.3 bits (72), Expect = 0.099
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Frame = -1
Query: 372 IGDNVNIGAGTI------TCNYDGANKFKTI-----IGDDVFVGSDTQLVAPVTVGKGAT 420
IGD+V IG T + +Y ++TI I DDV++G + + VT+G +
Sbjct: 7727 IGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSV 7548
Query: 421 IAAGTTVTRNVGENAL 436
+AA + V ++V + L
Sbjct: 7547 VAANSVVNQDVPPDTL 7500
>embl|AE004231|AE004231 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 139 of 251 of the complete
chromosome.
Length = 11185
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +3
Query: 7 SVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVID 41
S VILA G+ +RM K L L G+ +VQHVID
Sbjct: 2439 SWVILAGGQASRMGGQ-DKGLIQLNGQPLVQHVID 2540
>embl|AE004432|AE004432 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 89 of 93 of the complete
chromosome.
Length = 11493
Score = 27.7 bits (60), Expect = 2.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 290 VKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPG 335
V IGT CV+ ++ G +S +V+ +AAA I P A + G
Sbjct: 6896 VIIGTVCVVSYTLFGGFLAVSWTDLVQGLLMAAALMIVPIAAMNGG 6759
>embl|AE004317|AE004317 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 225 of 251 of the complete
chromosome.
Length = 11367
Score = 26.9 bits (58), Expect = 4.2
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +1
Query: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 339
IE ++LG+ ++ T + N C++ V E A FAR++PGA +
Sbjct: 7960 IESKLSLGNATQVHTLSELLNK-----CDVISLHVPETAGTKNMMGAEEFARMKPGAIFI 8124
Query: 340 EGAHVGNFVEMKKARLGKGSKAGHL 364
A G V++ L ++GH+
Sbjct: 8125 NAAR-GTVVDI--PALCNALESGHI 8190
>embl|AE004399|AE004399 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 56 of 93 of the complete
chromosome.
Length = 10392
Score = 25.8 bits (55), Expect = 9.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 271 DVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV 315
+V I+ + +I ++ L V++G GC + + +I +I PYT +
Sbjct: 4858 NVRINDSALIVDSI-LFDDVEVGEGCKLIHCIIDKHVKIPPYTEI 4989
Database: vc
Posted date: Nov 9, 2006 6:16 PM
Number of letters in database: 4,053,984
Number of sequences in database: 344
Lambda K H
0.317 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,734,625
Number of Sequences: 344
Number of extensions: 21655
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 35
length of query: 456
length of database: 1,351,328
effective HSP length: 89
effective length of query: 367
effective length of database: 1,320,712
effective search space: 484701304
effective search space used: 484701304
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)